@hackage BiobaseFasta0.2.0.0

streaming FASTA parser

Categories
- Bioinformatics
License
GPL-3.0-only
Maintainer
choener@bioinf.uni-leipzig.de
Links
Versions
- 0.4.0.1 Fri, 4 Jun 2021
- 0.4.0.0 Thu, 3 Jun 2021
- 0.3.0.1 Mon, 17 Jun 2019
- 0.3.0.0 Wed, 27 Mar 2019
- 0.2.0.0 Wed, 12 Dec 2018
- 0.0.1.0 Fri, 6 Dec 2013

Installation
In your cabal file:
Tested Compilers
- 8.4.3
Dependencies (8)
- base >=4.7 && <5.0
- bytestring
- deepseq
- BiobaseTypes >=0.1.4 && <0.1.5
- lens
- resourcet >=1.0
Dependents (5)
@hackage/RNAlien, @hackage/DnaProteinAlignment, @hackage/acme-everything, @hackage/BiobaseHTTPTools, @hackage/BlastHTTP

Stream-based handling of FASTA files. The user selects a window size, the library then handles the window. For each window, the previous (past) window is available, in case some data sits on the boundary between windows.

FastaTool is a simple tool providing information on FASTA files, and allowing to extract sequences and subsequences.

Greg Schwartz' http://hackage.haskell.org/package/fasta package is a lot more complete. This one is mostly tailored to my usage requirements (and may at some point use his library).

@hackage BiobaseFasta0.2.0.0

Categories

License

Maintainer

Links

Versions

Installation

Tested Compilers

Dependencies (8)

Dependents (5)