@hackage / seqloc-datafiles

Read and write BED and GTF format genome annotations

Latest0.4.2

Dependencies

library:seqloc-datafiles (13 dependencies)

@hackage / seqloc Handle sequence locations for bioinformatics
- Version: >=0.3.1
- License: MIT
@hackage / transformers-base Lift computations from the bottom of a transformer stack
- Version: >=0.4.3
- License: BSD-3-Clause
@hackage / attoparsec Fast combinator parsing for bytestrings and text
- Version: >=0.8.5
- License: BSD-3-Clause
@hackage / biocore A bioinformatics library
- Version: >=0.2
- License: LicenseRef-LGPL
@hackage / conduit-extra Batteries included conduit: adapters for common libraries.
- Version:
- License: MIT
@hackage / unordered-containers Efficient hashing-based container types
- Version:
- License: BSD-3-Clause
@hackage / lifted-base lifted IO operations from the base library
- Version: >=0.2.3
- License: BSD-3-Clause
@hackage / base Core data structures and operations
- Version: >=4.2 && <5
- License: BSD-3-Clause
@hackage / iteratee Iteratee-based I/O
- Version: >=0.8.1
- License: BSD-3-Clause
@hackage / bytestring Fast, compact, strict and lazy byte strings with a list interface
- Version:
- License: BSD-3-Clause
@hackage / conduit Streaming data processing library.
- Version:
- License: MIT
@hackage / hashable A class for types that can be converted to a hash value
- Version:
- License: BSD-3-Clause
@hackage / resourcet Deterministic allocation and freeing of scarce resources.
- Version:
- License: BSD-3-Clause

executable:bed-subregion (18 dependencies)

executable:bed-to-gtf (15 dependencies)

executable:genome-to-trx (13 dependencies)

executable:gtf-introns (14 dependencies)

executable:gtf-to-bed (15 dependencies)

test:test-bed (14 dependencies)

test:test-gtf (10 dependencies)

test:test-subregions (18 dependencies)