@hackage RNAFold1.99.1.1

RNA secondary structure prediction

Categories
- Bioinformatics
License
GPL-3.0-only
Maintainer
choener@tbi.univie.ac.at
Links
Versions
- 1.99.3.4 Fri, 6 Dec 2013
- 1.99.1.3 Sun, 8 Jul 2012
- 1.99.1.2 Sun, 20 May 2012
- 1.99.1.1 Fri, 30 Mar 2012
- 1.99.1.0 Fri, 30 Mar 2012
- 0.0.2.1 Wed, 22 Sep 2010

Installation
In your cabal file:
Dependencies (9)
- base >=4 && <5
- mtl >=2
- primitive >=0.4 && <0.5
- vector >=0.9 && <0.10
- ADPfusion ==0.0.1.0
- BiobaseVienna ==0.2.2.4
Dependents (3)
@hackage/RNAdesign, @hackage/acme-everything, @hackage/RNAFoldProgs

Package Flags

llvm

(on by default)

build using llvm backend

RNAfold v2 using the ADPfusion library. The RNAfold algorithm is used to determine how fast we can be compared to a highly optimized C program.

If possible, build using the GHC llvm backend, and GHC-7.2.2. GHC-7.4.x produces very bad code on my system, please benchmark using 7.2.2.

NOTE I'd like to rename this package to RNAfold, like the C implementation. Do not install "globally", especially if you normally use RNAfold from the ViennaRNA package, for obvious reasons.

NOTE I am reluctant to call this v2 for now.

@hackage RNAFold1.99.1.1

Categories

License

Maintainer

Links

Versions

Installation

Dependencies (9)

Dependents (3)

Package Flags