@hackage RNAlien dependencies

@haskell/transformers

Concrete functor and monad transformers

@haskell/text

An efficient packed Unicode text type.

@haskell/random

Pseudo-random number generation

@haskell/process

Process libraries

@haskell/parsec

Monadic parser combinators

@haskell/filepath

Library for manipulating FilePaths in a cross platform way.

@haskell/directory

Platform-agnostic library for filesystem operations

@haskell/containers

Assorted concrete container types

@haskell/bytestring

Fast, compact, strict and lazy byte strings with a list interface

@haskell/base

Core data structures and operations

@hackage/text-metrics

Calculate various string metrics efficiently

@hackage/pureMD5

A Haskell-only implementation of the MD5 digest (hash) algorithm.

@hackage/network

Low-level networking interface

@hackage/matrix

A native implementation of matrix operations.

MIT

@hackage/hxt

A collection of tools for processing XML with Haskell.

MIT

@hackage/http-types

Generic HTTP types for Haskell (for both client and server code).

@hackage/http-conduit

HTTP client package with conduit interface and HTTPS support.

@hackage/hierarchical-clustering

Fast algorithms for single, average/UPGMA and complete linkage clustering.

@hackage/either-unwrap

Functions for probing and unwrapping values inside of Either.

@hackage/edit-distance

Levenshtein and restricted Damerau-Levenshtein edit distances

@hackage/cmdargs

Command line argument processing

@hackage/cassava

A CSV parsing and encoding library

@hackage/blastxml

Library for reading Blast XML output

LicenseRef-LGPL>=0.3.2

@hackage/biofasta

Library for reading fasta sequence files

LicenseRef-GPL

@hackage/biocore

A bioinformatics library

LicenseRef-LGPL

@hackage/aeson

Fast JSON parsing and encoding

@hackage/ViennaRNAParser

Libary for parsing ViennaRNA package output

GPL-3.0-only>=1.3.2

@hackage/Taxonomy

Libary for parsing, processing and vizualization of taxonomy data

GPL-3.0-only>=1.0.2

@hackage/HTTP

A library for client-side HTTP

@hackage/EntrezHTTP

Libary to interface with the NCBI Entrez REST service.

GPL-3.0-only>=1.0.3

@hackage/ClustalParser

Libary for parsing Clustal tools output

GPL-3.0-only>=1.2.1

@hackage/BlastHTTP

Libary to interface with the NCBI blast REST interface

GPL-3.0-only>=1.2.1

executable:RNAcentralHTTPRequest (4 dependencies)

@haskell/base

Core data structures and operations

@hackage/either-unwrap

Functions for probing and unwrapping values inside of Either.

@hackage/cmdargs

Command line argument processing

@hackage/RNAlien

Unsupervized construction of RNA family models

executable:RNAlien (11 dependencies)

@haskell/random

Pseudo-random number generation

@haskell/filepath

Library for manipulating FilePaths in a cross platform way.

@haskell/directory

Platform-agnostic library for filesystem operations

@haskell/containers

Assorted concrete container types

@haskell/base

Core data structures and operations

@hackage/time

A time library

@hackage/either-unwrap

Functions for probing and unwrapping values inside of Either.

@hackage/cmdargs

Command line argument processing

@hackage/biofasta

Library for reading fasta sequence files

LicenseRef-GPL

@hackage/biocore

A bioinformatics library

LicenseRef-LGPL

@hackage/RNAlien

Unsupervized construction of RNA family models

executable:RNAlienStatistics (14 dependencies)

@haskell/vector

Efficient Arrays

@haskell/process

Process libraries

@haskell/filepath

Library for manipulating FilePaths in a cross platform way.

@haskell/directory

Platform-agnostic library for filesystem operations

@haskell/bytestring

Fast, compact, strict and lazy byte strings with a list interface

@haskell/base

Core data structures and operations

@hackage/split

Combinator library for splitting lists.

@hackage/either-unwrap

Functions for probing and unwrapping values inside of Either.

@hackage/cmdargs

Command line argument processing

@hackage/cassava

A CSV parsing and encoding library

@hackage/biofasta

Library for reading fasta sequence files

LicenseRef-GPL

@hackage/biocore

A bioinformatics library

LicenseRef-LGPL

@hackage/ViennaRNAParser

Libary for parsing ViennaRNA package output

GPL-3.0-only>=1.3.2

@hackage/RNAlien

Unsupervized construction of RNA family models

executable:cmsearchToBed (6 dependencies)

@haskell/text

An efficient packed Unicode text type.

@haskell/bytestring

Fast, compact, strict and lazy byte strings with a list interface

@haskell/base

Core data structures and operations

@hackage/either-unwrap

Functions for probing and unwrapping values inside of Either.

@hackage/cmdargs

Command line argument processing

@hackage/RNAlien

Unsupervized construction of RNA family models