@hackage GenussFold0.0.0.2

MCFGs for Genus-1 RNA Pseudoknots

Categories
- Bioinformatics
License
GPL-3.0-only
Maintainer
choener@bioinf.uni-leipzig.de
Links
Versions
- 0.0.0.2 Thu, 16 Jul 2015
- 0.0.0.1 Tue, 14 Jul 2015

Installation
In your cabal file:
Dependencies (16)
- base >=4.7 && <4.9
- bytestring >=0.10 && <0.11
- containers
- mtl >=2.0 && <3.0
- template-haskell
- text >=1.0 && <1.3
Dependents (0)

Package Flags

debug

(off by default)

dump intermediate Core files

generalized Algebraic Dynamic Programming

Genus-1 RNA pseudoknot grammars implemented with a multiple context-free language. Compared to the usual implementations that are based on explicit recursions, an implementation based on a formal grammar is much more pleasing to write.

Consult the README for details.

BioInf.GenussFold.PKN: Recursive pseudoknots with a simple basepair maximization scoring scheme.

@hackage GenussFold0.0.0.2

Categories

License

Maintainer

Links

Versions

Installation

Dependencies (16)

Dependents (0)

Package Flags