@hackage / FormalGrammars

(Context-free) grammars in formal language theory

Latest0.4.0.0

About

Metadata

  • Last updated , by ChristianHoener
  • License GPL-3.0-only
  • Categories Bioinformatics

  • Maintained by: choener@bioinf.uni-leipzig.de

  • Lottery factor: 0

Links

Installation

Tested Compilers

  1. 8.6.4

Package Flags

Use the -f option with cabal commands to enable flags

    examples (off by default)

    build the examples

    debugdump (off by default)

    dump intermediate Core files

    llvm (off by default)

    use llvm

Readme

Build Status

FormalGrammars: A DSL for formal languages in Haskell

generalized Algebraic Dynamic Programming Homepage

The gADP homepage has a tutorial and example on how to write algorithms / grammars.

Ideas implemented here are described in a couple of papers:

  1. Christian Hoener zu Siederdissen
    Sneaking Around ConcatMap: Efficient Combinators for Dynamic Programming
    2012, Proceedings of the 17th ACM SIGPLAN international conference on Functional programming
    paper preprint
  2. Andrew Farmer, Christian Höner zu Siederdissen, and Andy Gill.
    The HERMIT in the stream: fusing stream fusion’s concatMap
    2014, Proceedings of the ACM SIGPLAN 2014 workshop on Partial evaluation and program manipulation.
    paper
  3. Christian Höner zu Siederdissen, Ivo L. Hofacker, and Peter F. Stadler.
    Product Grammars for Alignment and Folding
    2014, IEEE/ACM Transactions on Computational Biology and Bioinformatics. 99
    paper
  4. Christian Höner zu Siederdissen, Sonja J. Prohaska, and Peter F. Stadler
    Algebraic Dynamic Programming over General Data Structures
    2015, BMC Bioinformatics
    preprint
  5. Maik Riechert, Christian Höner zu Siederdissen, and Peter F. Stadler
    Algebraic dynamic programming for multiple context-free languages
    2016, Theoretical Computer Science
    preprint
Contact

Christian Hoener zu Siederdissen
Leipzig University, Leipzig, Germany
choener@bioinf.uni-leipzig.de
http://www.bioinf.uni-leipzig.de/~choener/