@hackage BiobaseXNA0.11.1.1

Efficient RNA/DNA/Protein Primary/Secondary Structure

Categories
- Bioinformatics
License
BSD-3-Clause
Maintainer
choener@bioinf.uni-leipzig.de
Links
Versions
- 0.11.1.1 Fri, 4 Jun 2021
- 0.11.1.0 Thu, 3 Jun 2021
- 0.11.0.0 Fri, 14 Jun 2019
- 0.10.0.0 Thu, 23 Nov 2017
- 0.9.3.1 Mon, 6 Mar 2017
- 0.9.3.0 Thu, 1 Sep 2016

Installation
In your cabal file:
Dependencies (30)
- base >=4.7 && <5.0
- binary >=0.7
- bytestring >=0.10
- containers >=0.5
- deepseq >=1.3
- mtl >=2.0
Dependents (18)
@hackage/Forestry, @hackage/BiobaseInfernal, @hackage/RNAFold, @hackage/Nussinov78, @hackage/cmv, @hackage/DnaProteinAlignment, Show all…

This is a base library for bioinformatics with emphasis on RNA and DNA primary structure as well as amino acid sequences.

Provided are efficient encodings for short (limited by the amount of RAM) sequences, as required by RNA folding tools. Extended RNA secondary structures can be represented as well.

Contains data from:

Frequency and isostericity of RNA base pairs
Jesse Stombaugh, Craig L. Zirbel, Eric Westhof, and Neocles B. Leontis
Nucl. Acids Res. (2009)

http://dx.crossref.org/10.1093%2Fnar%2Fgkp011

@hackage BiobaseXNA0.11.1.1

Categories

License

Maintainer

Links

Versions

Installation

Dependencies (30)

Dependents (18)