@hackage estreps0.3.1

Repeats from ESTs

Categories
- Bioinformatics
License
LicenseRef-GPL
Maintainer
Ketil Malde <ketil@malde.org>
Links
- Homepage
- Documentation
- No source repository
- Security
Versions
- 0.3.1 Wed, 7 Oct 2009
- 0.3 Fri, 30 Jan 2009
- 0.1 Sat, 8 Mar 2008

Installation
In your cabal file:
Dependencies (0)
- base >3 && <4
- bytestring
- containers
- random
- bio >=0.4
Dependents (1)
@hackage/acme-everything

rselect - select a random set of sequences from a FASTA file, optinally with random orientation (forward/reverse complement).
reps - extract exact k-word repeats based that occur in sequences grouped in different clusters.

The Darcs repository is at: http://malde.org/~ketil/biohaskell/estreps.